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Smad4 regulates TGF-β1-mediated hedgehog activation to promote epithelial-to-mesenchymal transition in pancreatic cancer cells by suppressing Gli1 activity

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: Hangcheng Guo | Zujian Hu | Xuejia Yang | Ziwei Yuan | Mengsi Wang | Chaoyue Chen | Lili Xie | Yuanyuan Gao | Wangjian Li | Yongheng Bai | Chunjing Lin

https://doi.org/10.1016/j.csbj.2024.03.010 Actions

Proteomics appending a complementary dimension to precision oncotherapy

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: Zhaokai Zhou | Ruiqi Zhang | Aoyang Zhou | Jinxiang Lv | Shuang Chen | Haijiao Zou | Ge Zhang | Ting Lin | Zhan Wang | Yuyuan Zhang | Siyuan Weng | Xinwei Han | Zaoqu Liu

https://doi.org/10.1016/j.csbj.2024.04.044 Actions

A contrastive learning approach to integrate spatial transcriptomics and histological images

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: Yu Lin | Yanchun Liang | Duolin Wang | Yuzhou Chang | Qin Ma | Yan Wang | Fei He | Dong Xu

https://doi.org/10.1016/j.csbj.2024.04.039 Actions

Integrating predictive coding and a user-centric interface for enhanced auditing and quality in cancer registry data

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Research funded by National Science and Technology Council (NSTC 112\u20132221-E-992\u2212056 -MY3,112-2221-E-992 -056 -MY3) | Health Promotion Administration (A1100302)

Authors: Hong-Jie Dai | Chien-Chang Chen | Tatheer Hussain Mir | Ting-Yu Wang | Chen-Kai Wang | Ya-Chen Chang | Shu-Jung Yu | Yi-Wen Shen | Cheng-Jiun Huang | Chia-Hsuan Tsai | Ching-Yun Wang | Hsiao-Jou Chen | Pei-Shan Weng | You-Xiang Lin | Sheng-Wei Chen | Ming-Ju Tsai | Shian-Fei Juang | Su-Ying Wu | Wen-Tsung Tsai | Ming-Yii Huang | Chih-Jen Huang | Chih-Jen Yang | Ping-Zun Liu | Chiao-Wen Huang | Chi-Yen Huang | William Yu Chung Wang | Inn-Wen Chong | Yi-Hsin Yang

https://doi.org/10.1016/j.csbj.2024.04.007 Actions

A holistic approach to understanding immune-mediated inflammatory diseases: bioinformatic tools to integrate omics data

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: Gonzalo Borrego-Yaniz | Laura C. Terrón-Camero | Martin Kerick | Eduardo Andrés-León | Javier Martin

https://doi.org/10.1016/j.csbj.2023.11.045 Actions

Artificial intelligence in clinical applications

JOURNAL ARTICLE published 19 March 2024 in Applied and Computational Engineering

Authors: Xibei Wang | Shizhen Weng | Ziyu Xie

https://doi.org/10.54254/2755-2721/48/20241199 Actions

Boosting aquila optimizer by marine predators algorithm for combinatorial optimization

JOURNAL ARTICLE published 6 March 2024 in Journal of Computational Design and Engineering

Research funded by Putian University (2023014) | Putian Science and Technology Bureau (2023SZ3001PTXY07,2021H6038)

Authors: Shuang Wang | Heming Jia | Abdelazim G Hussien | Laith Abualigah | Guanjun Lin | Hongwei Wei | Zhenheng Lin | Krishna Gopal Dhal

https://doi.org/10.1093/jcde/qwae004 Actions

Learned Full Waveform Inversion Incorporating Task Information for Ultrasound Computed Tomography

JOURNAL ARTICLE published 2024 in IEEE Transactions on Computational Imaging

Research funded by NIH (R01 EB028652) | Los Alamos National Laboratory (20200061DR)

Authors: Luke Lozenski | Hanchen Wang | Fu Li | Mark Anastasio | Brendt Wohlberg | Youzuo Lin | Umberto Villa

https://doi.org/10.1109/tci.2024.3351529 Actions

Study on acoustic emission characteristics during shear deformation of rock structural planes based on particle flow code

JOURNAL ARTICLE published February 2024 in Computational Particle Mechanics

Research funded by Fundamental Research Funds for Central Universities of the Central South University (3205002107D) | Postgraduate Research & Practice Innovation Program of Jiangsu Province (KYCX20-0117)

Authors: W. Yuan | Y. Cheng | M. Min | X. Wang

https://doi.org/10.1007/s40571-023-00611-z Actions

Spatial analysis and optimization of self-pickup points of a new retail model in the Post-Epidemic Era: the case of Community-Group-Buying in Xi’an City

JOURNAL ARTICLE published 20 March 2023 in Computational Urban Science

Research funded by Northwest University Key Project Fund for Prevention and Control of Novel Coronavirus Pneumonia (No. 2020)

Authors: Zhe Lin | Gang Li | Muhammad Sajid Mehmood | Qifan Nie | Ziwan Zheng

https://doi.org/10.1007/s43762-023-00089-8 Actions

Structural, electronic, and optoelectronic properties in hybrid system Cs2Sn(I1−xBrx)6: DFT-based study

JOURNAL ARTICLE published February 2023 in Computational Materials Science

Authors: Ling Xu | Jun Zhang | Yunxin Kang | Chengshuai Sun | Qingyu Wu | Xiaoxiao Zhang | Mingyu Chen | Guangfen Wei | Pingjian Wang | Zhonghai Lin

https://doi.org/10.1016/j.commatsci.2022.111961 Actions

An Introduction to the Probabilistic Linear Matching Method Framework for Structural Integrity Assessment Under Uncertain Design Conditions

BOOK CHAPTER published 2023 in Direct Methods for Limit State of Materials and Structures

Authors: Xiaoxiao Wang | Haofeng Chen

https://doi.org/10.1007/978-3-031-29122-7_4 Actions

Building an ensemble learning model for gastric cancer cell line classification via rapid raman spectroscopy

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Basic and Applied Basic Research Foundation of Guangdong Province (2021A1515011743) | National Natural Science Foundation of China (82172861) | National Key Research and Development Program of China (2021YFA1302100)

Authors: Kunxiang Liu | Bo Liu | Yuhong Zhang | Qinian Wu | Ming Zhong | Lindong Shang | Yu Wang | Peng Liang | Weiguo Wang | Qi Zhao | Bei Li

https://doi.org/10.1016/j.csbj.2022.12.050 Actions

Dialogue Planning via Brownian Bridge Stochastic Process for Goal-directed Proactive Dialogue

PROCEEDINGS ARTICLE published 2023 in Findings of the Association for Computational Linguistics: ACL 2023

Authors: Jian Wang | Dongding Lin | Wenjie Li

https://doi.org/10.18653/v1/2023.findings-acl.25 Actions

RNAsmc: A integrated tool for comparing RNA secondary structure and evaluating allosteric effects

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Hong Wang | Xiaoyan Lu | Hewei Zheng | Wencan Wang | Guosi Zhang | Siyu Wang | Peng Lin | Youyuan Zhuang | Chong Chen | Qi Chen | Jia Qu | Liangde Xu

https://doi.org/10.1016/j.csbj.2023.01.007 Actions

Bulk RNA-seq and scRNA-seq analysis reveal an activation of immune response and compromise of secretory function in major salivary glands of obese mice

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (31571495,31830113)

Authors: Heping Huang | Ce Gao | Shuai Wang | Fen Wu | Jinsong Wei | Jinrong Peng

https://doi.org/10.1016/j.csbj.2022.11.054 Actions

Gastrointestinal pan-cancer landscape of tumor matrix heterogeneity identifies biologically distinct matrix stiffness subtypes predicting prognosis and chemotherapy efficacy

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Yumei Ning | Kun Lin | Jun Fang | Yang Ding | Zhang Zhang | Xiaojia Chen | Qiu Zhao | Haizhou Wang | Fan Wang

https://doi.org/10.1016/j.csbj.2023.04.016 Actions

OPTIMUM DESIGN OF ROCKING WALL COUPLED WITH BUILDING UNDER STOCHASTIC SEISMIC GROUND MOTION

PROCEEDINGS ARTICLE published 2023 in Proceedings of the 8th International Conference on Computational Methods in Structural Dynamics and Earthquake Engineering (COMPDYN 2015)

Authors: Michela De Angelis | Giuseppe Quaranta | Giulia Angelucci | Stefano Pampanin | Fabrizio Mollaioli

https://doi.org/10.7712/120123.10384.20711 Actions

CUCUME: An RNA methylation database integrating systemic mRNAs signals, GWAS and QTL genetic regulation and epigenetics in different tissues of Cucurbitaceae

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Xiaojun Li | Shujin Lin | Chenggang Xiang | Wenqian Liu | Xiaojing Zhang | Cuicui Wang | Xiaohong Lu | Mengshuang Liu | Tao Wang | Zixi Liu | Naonao Wang | Lihong Gao | Xiao Han | Wenna Zhang

https://doi.org/10.1016/j.csbj.2023.01.012 Actions

PDGF-D-induced immunoproteasome activation and cell-cell interactions

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Jianing Zhang | Wanhong Li | Zhen Xiong | Juanhua Zhu | Xiangrong Ren | Shasha Wang | Haiqing Kuang | Xianchai Lin | Antonio Mora | Xuri Li

https://doi.org/10.1016/j.csbj.2023.03.047 Actions
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